PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000478G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | WRKY | ||||||||
Protein Properties | Length: 160aa MW: 17280.2 Da PI: 4.728 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.4 | 9.1e-11 | 136 | 156 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK +k++++pr PH01000478G0060 136 SDGYRWRKYGQKLIKNNPHPR 156 7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 12.599 | 130 | 159 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-10 | 130 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-9 | 134 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-7 | 137 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MDDMDIWSGE LDEQLVNELL NDDELLMMMS TALSTTTPTA DCFDSCTSST GAMLSGSTPA 60 DQEPPAAVRN ALPSAYSGPT IQDVEKALAS QCPPSTSTRR SASPSFLFEP WGSRGSAEIN 120 SKYTARVRSS GGKLPSDGYR WRKYGQKLIK NNPHPRWAI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000478G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148290.1 | 4e-32 | WRKY transcription factor WRKY24-like isoform X1 | ||||
TrEMBL | A0A453FWU7 | 7e-32 | A0A453FWU7_AEGTS; Uncharacterized protein | ||||
TrEMBL | F2DFL9 | 4e-31 | F2DFL9_HORVV; Predicted protein | ||||
STRING | MLOC_19031.2 | 8e-33 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-11 | WRKY DNA-binding protein 49 |