PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000391G0630
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 341aa    MW: 36542.8 Da    PI: 7.2932
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000391G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.1e-294107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C +++++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q++q
  PH01000391G0630   4 SCNGCRVLRKGCSEGCSVRQCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGPHDLRPAIFRSLMYEACGRIVNPIYGSVGLLWSGNWQMCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  PH01000391G0630  98 AAVEAVLKGA 107
                      ****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8033109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSEGCS VRQCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGPHD  60
LRPAIFRSLM YEACGRIVNP IYGSVGLLWS GNWQMCQAAV EAVLKGAPIV QISSEVAAAN  120
PTPALKAYGY DIRHVSKLDK DTPGAAATGS LHKVAKPGRT RFKRASSASS NHRPRPRAAA  180
EEPDHEEEVS AGHHDEDGAF QRALSHESSD SHNDHVGDGM AAELEPHCQD DQEASEAEAR  240
SHVSQAEQST APAGPGAENV EDEEQQLGLD LTLGFAPVAA RVTRPAGCHL SGRSGSASGS  300
CRCRAVDGAR GDQYKRQELR LRVVLSVCSK SFYNNFLSCY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000391G0630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977350.0FP097735.1 Phyllostachys edulis cDNA clone: bphyem210f12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176408.11e-116LOB domain-containing protein 40-like
SwissprotQ9M8862e-80LBD41_ARATH; LOB domain-containing protein 41
TrEMBLF2DDE61e-129F2DDE6_HORVV; Predicted protein
STRINGMLOC_58304.11e-130(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-83LOB domain-containing protein 41