PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000381G0780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43603.7 Da PI: 5.4459 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.5e-30 | 57 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+P+d el+ e+L++k ++ e +i++ +i++++P++Lp +k++ ++ +fF++ +++y g+rk+r PH01000381G0780 57 LPAGVKFDPSDLELL-EHLEEKNGLGGskphmfID--EfipTIENDeGICYSHPENLP-GMKKDGSSAHFFHRVSNAYGCGQRKRRRisksdht 146 799************.8899885544434664423..22222544447**********.67788899*******************65777776 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tgk+k++++ +g ++g kk++v+yk r k+ k++Wvmh+y+l PH01000381G0780 147 vsDEHVRWHKTGKSKAIYD-NGVKKGWKKIMVLYKSsqRGGKPDKANWVMHQYHL 200 6555899************.999***********7612555667*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-35 | 42 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.085 | 57 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-12 | 58 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MARSWLITGR GVAKKIRNAT HCSNRQISEL GAEARRECPN CKHLIDNSDV AIQWPGLPAG 60 VKFDPSDLEL LEHLEEKNGL GGSKPHMFID EFIPTIENDE GICYSHPENL PGMKKDGSSA 120 HFFHRVSNAY GCGQRKRRRI SKSDHTVSDE HVRWHKTGKS KAIYDNGVKK GWKKIMVLYK 180 SSQRGGKPDK ANWVMHQYHL GEEEEENDGE LVVSKIFCQL QTKQMDKSET ETADEECDAF 240 AARIGPKTPK TNTPQPCRPK NSPCETEQNA LILQDQEGES NIPIVSLKDD AENPAWCAGE 300 PQAVEAAPQA WSSDESLHCH EVLDSFDHET LIPFDWPILS QSRNETLDKS LNALYGLPDL 360 QNLGTPPDLQ LADLQFGSQE SIGSWLDRI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000381G0780 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624086.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | Q6NQK2 | 1e-83 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1P8VK40 | 0.0 | A0A1P8VK40_BAMEM; NAC2 transcription factor | ||||
STRING | OPUNC02G20570.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01600.1 | 5e-84 | NAC domain containing protein 44 |