PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000355G1080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 305aa    MW: 32875.5 Da    PI: 7.4438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000355G1080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12108159155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+ +  A++++k+L+
  PH01000355G1080 108 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASLVAGAINFVKELE 159
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17106182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-12106163No hitNo description
PROSITE profilePS5088815.059107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13108171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-9113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRAPSLDCGI DIDELEEKGG VLLQEEAGAM MLGAGATTWV DAAACACSIA SGAVEEYWDE  60
KHYPVSPPPP VVPPTPAASG HGKAAAAAAR RRRRRPKAVK NKEEMENQRR NHIAVERNRR  120
RQMNEYLAVL RSVMPPSYAQ RGDQASLVAG AINFVKELEQ LLQSLEAQKR RAPCSQPAPV  180
PFARFFAFPQ YSAGAGASDN ASSGNGEGGC GARRGVADIE VVMAESHANV KVLAPRRPRQ  240
LLRMVVALQC LGLTVLHLNV TTTVDHLVLY SFSLKIEDEC RLSSVDEIAA AVHQMVAQIA  300
EDCVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RRRRRR
2109119RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000355G1080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945520.0FP094552.1 Phyllostachys edulis cDNA clone: bphylf024j19, full insert sequence.
GenBankFP0987390.0FP098739.1 Phyllostachys edulis cDNA clone: bphyst010j12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623907.11e-138transcription factor bHLH94
SwissprotQ9C7T41e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0K5G21e-145A0A0E0K5G2_ORYPU; Uncharacterized protein
STRINGOPUNC02G30580.11e-145(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]