PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000333G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 270aa    MW: 29420.1 Da    PI: 8.3248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000333G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54.1e-127399127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C++f++t  Ck+G++CkF+H++
  PH01000333G0580 73 PGEPDCPYFMKTSKCKFGSKCKFNHPK 99
                     5789*********************96 PP
2zf-CCCH35.71.4e-11128152327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +lC f+a+t  Ck+G++CkF+H++
  PH01000333G0580 128 KPLCTFYAKTAKCKFGAKCKFNHPK 152
                      69*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.7E-67299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44172100IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-97499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-677102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-57899IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197125153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5126152IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5130151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPSIMMVPLC LWATWLHPLQ LTYPHHAGQM ALRCPVAPLA APTVAVISFF KSLSHSIMGR  60
MVPNLEESYP ERPGEPDCPY FMKTSKCKFG SKCKFNHPKE KVNASVVGTD DEESLIADGS  120
ILPVRPSKPL CTFYAKTAKC KFGAKCKFNH PKDIEIPSSG KESKNTAAVE AAGHNGGADD  180
SVSAKMFAPV AATAQEHNSK GLPIRPGEVD CPFYMKTGRY PLGLFSSRTL LFSVDFGSFA  240
HEFGGISDLT FPSVLLQLQV WFYMPIQPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000333G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116822e-78AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121162e-78AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815023.14e-72zinc finger CCCH domain-containing protein 8-like isoform X3
SwissprotQ5ZDJ66e-72C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2T8IL181e-73A0A2T8IL18_9POAL; Uncharacterized protein
STRINGLPERR01G19520.13e-71(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-48floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]