PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000253G0990

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

BES1

Protein Properties

Length: 349aa MW: 36527.4 Da PI: 8.2943

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000253G0990	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	192.3	1.7e-59	8	153	1	147
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 gg+ r ptw+ErEnn+rRERrRRa+aakiyaGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+a+ +g sas sp+s PH01000253G0990 8 GGGARVPTWRERENNRRRERRRRAVAAKIYAGLRAYGNYDLPKHCDNNEVLKALCHEAGWTVEPDGTTYRKGCKPPaaERADPIGGSASPSPCS 101 6899**********************************************************************999*********** PP DUF822 93 slqsslkssalaspvesysaspksssfpspssldsislasa.........asllpvlsvlslvs 147 s++ +sp++sy+ sssfps++s+++i+l +sl+p+l++ls++ PH01000253G0990 102 SYH--------PSPRASYN----SSSFPSSASSSQITLGGGssffggvegSSLIPWLRNLSSSG 153 *........44444443....44555555555554443344555555588999999988744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.3E-64	9	150	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MTDGGGGGGG ARVPTWRERE NNRRRERRRR AVAAKIYAGL RAYGNYDLPK HCDNNEVLKA 60 LCHEAGWTVE PDGTTYRKGC KPPAAERADP IGGSASPSPC SSYHPSPRAS YNSSSFPSSA 120 SSSQITLGGG SSFFGGVEGS SLIPWLRNLS SSGSSHFASS SKFPVHHHPY FNGGSISAPV 180 TPPSGSPPRT PRLKTGGWEY PGHVLPPWAG ANYASLPNST PPSPGHKVAP DPAWLAGFQI 240 SSAGPSSPTY SLVAPNNPFA AFKEVVASSS RMCTPGQSGT CSPVVGGAPM IHGDVEMIDG 300 AGHEFAFGSS DKMQGLVKAW EGERIHEECG SDELELTLGS SRTRADHP*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MTDGGGGGGG ARVPTWRERE NNRRRERRRR AVAAKIYAGL RAYGNYDLPK HCDNNEVLKA  60
LCHEAGWTVE PDGTTYRKGC KPPAAERADP IGGSASPSPC SSYHPSPRAS YNSSSFPSSA  120
SSSQITLGGG SSFFGGVEGS SLIPWLRNLS SSGSSHFASS SKFPVHHHPY FNGGSISAPV  180
TPPSGSPPRT PRLKTGGWEY PGHVLPPWAG ANYASLPNST PPSPGHKVAP DPAWLAGFQI  240
SSAGPSSPTY SLVAPNNPFA AFKEVVASSS RMCTPGQSGT CSPVVGGAPM IHGDVEMIDG  300
AGHEFAFGSS DKMQGLVKAW EGERIHEECG SDELELTLGS SRTRADHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-24	12	88	372	448	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-24	12	88	372	448	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-24	12	88	372	448	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-24	12	88	372	448	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000253G0990

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	1e-105	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136786.1	1e-161	BES transcription factor
Swissprot	Q5Z9E5	1e-160	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A3L6DHP0	1e-159	A0A3L6DHP0_MAIZE; Protein BZR1 3
TrEMBL	B4FKI7	1e-159	B4FKI7_MAIZE; BES transcription factor
STRING	GRMZM5G812774_P01	1e-160	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-64	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]