PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000209G1040

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 491aa MW: 53195.3 Da PI: 7.8593

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000209G1040	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.9e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvPvG+grr+nk++s PH01000209G1040 106 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCRNCQRYWTAGGTMRNVPVGAGRRRNKHAS 166 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	92	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MAALRGRDPA IKLFGRTIPL LDPAAAAAAA VVITKLTNDV KNNDGIPCVP NKLLNVEEIP 60 FCSKNSEEND LQAISRQGGK METDSKSEEV KTESDVSGQE KVLKKPDKIL PCPRCNSMET 120 KFCYFNNYNV NQPRHFCRNC QRYWTAGGTM RNVPVGAGRR RNKHASHFRH AMMPCDNIVA 180 APGDVSEVIH NQALPLVPPA LPGPIKENET VTKFGSEVPV CESMSSILNI GNQKNTDFVS 240 LASGDNKDEN SCASSAAVSG CSENRMPDNA VKEEPNNVSG YCNGVTLPHP HIQSYPTGPA 300 LVFPWSPGWN SVAVMAATQC STEPVHGLEN TNPCPPLWPP PSMMQAPGIC APVPFPLVPP 360 FWSCIPGWPN GMWASPWPGS NGTAVPSIRP NKITCSGNNS PTLGKHSREA NLQEEEKTEK 420 NLWVPKTLRI DDPTEALKSS IWDTLGIKPD DKKGVFKSFQ SKVGKTPESP QALKANPAAL 480 SRSQSFQERT *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MAALRGRDPA IKLFGRTIPL LDPAAAAAAA VVITKLTNDV KNNDGIPCVP NKLLNVEEIP  60
FCSKNSEEND LQAISRQGGK METDSKSEEV KTESDVSGQE KVLKKPDKIL PCPRCNSMET  120
KFCYFNNYNV NQPRHFCRNC QRYWTAGGTM RNVPVGAGRR RNKHASHFRH AMMPCDNIVA  180
APGDVSEVIH NQALPLVPPA LPGPIKENET VTKFGSEVPV CESMSSILNI GNQKNTDFVS  240
LASGDNKDEN SCASSAAVSG CSENRMPDNA VKEEPNNVSG YCNGVTLPHP HIQSYPTGPA  300
LVFPWSPGWN SVAVMAATQC STEPVHGLEN TNPCPPLWPP PSMMQAPGIC APVPFPLVPP  360
FWSCIPGWPN GMWASPWPGS NGTAVPSIRP NKITCSGNNS PTLGKHSREA NLQEEEKTEK  420
NLWVPKTLRI DDPTEALKSS IWDTLGIKPD DKKGVFKSFQ SKVGKTPESP QALKANPAAL  480
SRSQSFQERT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000209G1040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565663.1	0.0	cyclic dof factor 2
TrEMBL	A0A1D8F0I5	0.0	A0A1D8F0I5_9POAL; Dof protein
STRING	BRADI2G10640.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-73	cycling DOF factor 2