PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000197G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 398aa    MW: 42864.6 Da    PI: 8.4107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000197G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.7e-07215262455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++++ + RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  PH01000197G0410 215 TKSMNAQVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 262
                      67888999******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.538211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-7214266No hitNo description
SuperFamilySSF474594.19E-13215278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-7217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAQCGGDVSR HPQSSRRAQQ GTIESLCQGL LDDVMVDDDK YRAMCGAFGY LQEWPDLSSI  60
CYTGFGASPS DAAAQETSNG NSSFSCSGGR KRRPDAYLEA KGDSSNVCKR PRGKQQLCDL  120
DQIAAGVGVG KGKRGRPKPG TKKKAELAWS KDFRAASTVT AGQKTDYIHV RARRGQATDN  180
HSLAERVLTA LNQWTCTSDV LKLVYVLVAR INGMTKSMNA QVRRERISER MRYLQELVPG  240
CNKVTGKAGM LDEIINYVQS LQKQVEFLSM KIAASNPVVN FNIVEDFFGR QLNQACNPAS  300
LPGMTLPIGQ LEQSCLQMSP MLMQPAAGSP GFGLEMVFNN PYPPVPVGPM SAATPVSVPA  360
TAPIESCLNV NGAAAWDTGS QNLFGGFDAQ FQSVQSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000197G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191833e-93AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570191.11e-147transcription factor bHLH63
TrEMBLA0A0A9CZD01e-159A0A0A9CZD0_ARUDO; Uncharacterized protein
STRINGOPUNC02G27080.21e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-42cryptochrome-interacting basic-helix-loop-helix 1