PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000193G0900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | AP2 | ||||||||
Protein Properties | Length: 613aa MW: 65456.2 Da PI: 6.2922 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32 | 3e-10 | 377 | 418 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 k grW A+I + +k +lg+f t eeAa+a++ a+ k++g PH01000193G0900 377 K-HGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418 4.7******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.64 | 267 | 360 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 268 | 279 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-9 | 307 | 361 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-4 | 310 | 366 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-8 | 314 | 361 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.06E-10 | 330 | 361 | No hit | No description |
PROSITE profile | PS51032 | 16.002 | 349 | 426 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.05E-20 | 374 | 428 | No hit | No description |
SMART | SM00380 | 4.6E-24 | 374 | 432 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-14 | 375 | 427 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-14 | 377 | 426 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-5 | 377 | 418 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 408 | 428 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MANGGNWLGF SLSPHMAMEV PSSSEPASAH PPPPASALSS SSNNATTCNF LFSPPAQMAA 60 PSPGYYYVGG AYGDGTTGVY YSHLPVMPTK SDGSLCNMEG MMPSSSPKLE DFLGGGNGSG 120 HDTANYYSHH QGQEEEASRA TYPHHHQLVP YNFQPLTEAE MLQEAAVPME EAMAAAKNFV 180 VTSYGACYSN GEMQPLSLSM SPGSQSSSCV SAAPQQHQIQ MAVVAAQGGS NGGGEQFAGK 240 KRGTGKGGQK QPVHRKSIDT FGQRTSQYRG VTSKSFDSFV EALFILNDEG TGGLGDMKPT 300 SGITVAKRMV RQGKEDKVVS RFLNFSSRAL GGYDTEDKAA RAYDLAALKY WGPSTHINFP 360 EKQWVFSWCF NLPRSYKHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN 420 AVTNFDITRY DVDKIMESNS LLPGEAARKV KAIEAADDVS LMQNSGRELI PAEEASATGT 480 DWRMVLHGSP QQAVPCADVT DLQKGIMGDP HSSLHGIVEL DVESAAHDID VSGKIGGINF 540 SNSSSLVTSL SNSREGSPER LGLAMLYAKH PNAVSLASMS PWMPMPVPTA TPALRPPNAI 600 THLPVFAAWT DA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000193G0900 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690535.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0A9LT82 | 0.0 | A0A0A9LT82_ARUDO; Uncharacterized protein | ||||
STRING | OB03G19620.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 4e-56 | AP2 family protein |