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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PH01000162G0420 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 331aa MW: 36201.8 Da PI: 9.4515 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 97.9 | 1.1e-30 | 165 | 221 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d+p+YVNaKQy++Il+RR +Rak+e+e++l k rkpylheSRh hA+rR+RgsgGrF
PH01000162G0420 165 DAPIYVNAKQYEGILRRRRARAKAERENRL-VKFRKPYLHESRHLHAMRRARGSGGRF 221
68****************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 3.4E-34 | 163 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 36.972 | 164 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 2.2E-23 | 167 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 1.4E-27 | 167 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE pattern | PS00686 | 0 | 169 | 189 | IPR018362 | CCAAT-binding factor, conserved site |
| PRINTS | PR00616 | 2.2E-23 | 198 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
| GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 331 aa Download sequence Send to blast |
MMSFKSHEGF GQVAAGSQAT NGAPLPWWAG PQLLYGESLG QGKAAMSPEN ACREGQFQVL 60 PRGQTMLDPL VPPKATQPLT ERGIPDVLKF SMAQDKGEKG SEHSATIALQ SPFTEYNGRF 120 ELGLGQSVVS SNHPYADQQH YGLLSPYGMR STSGRMLIPL NMPADAPIYV NAKQYEGILR 180 RRRARAKAER ENRLVKFRKP YLHESRHLHA MRRARGSGGR FLNTKKEING KEAGRGCKVM 240 DGSPPMRPAA SPSSGIQHSE QGNPSSVSSL SGSEVTSMYE HEDVDHYHSF EHLRRHFFTP 300 LPSITDGEHG AGNPFKWATA SDGCCDLLKA * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4awl_A | 7e-17 | 165 | 227 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PH01000162G0420 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006664212.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
| Refseq | XP_015698540.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
| Refseq | XP_015698541.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
| Refseq | XP_015698542.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
| Refseq | XP_020188697.1 | 1e-154 | nuclear transcription factor Y subunit A-2-like | ||||
| Refseq | XP_020188698.1 | 1e-154 | nuclear transcription factor Y subunit A-2-like | ||||
| Refseq | XP_020188699.1 | 1e-154 | nuclear transcription factor Y subunit A-2-like | ||||
| Refseq | XP_020188700.1 | 1e-154 | nuclear transcription factor Y subunit A-2-like | ||||
| Refseq | XP_020188701.1 | 1e-154 | nuclear transcription factor Y subunit A-2-like | ||||
| TrEMBL | A0A0A9CZS6 | 1e-161 | A0A0A9CZS6_ARUDO; Uncharacterized protein | ||||
| STRING | Traes_5BS_F1DE20B4B.1 | 1e-158 | (Triticum aestivum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2307 | 37 | 90 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G05690.1 | 2e-30 | nuclear factor Y, subunit A2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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