PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000104G0210

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 446aa MW: 47997.1 Da PI: 10.1442

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000104G0210	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	266	313	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PH01000104G0210 266 SHNLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-17	260	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.421	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-17	265	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.49E-11	266	317	No hit	No description
Pfam	PF00010	1.2E-7	266	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-12	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAATNNLRPY SHTHNASTMI DMEVSSHASS QSFDRPVSLP SLIPFGSPAV FSRMPLREGK 60 PKGRKGKREK EQHNRKSKIM DSDNGNGVGI QGNASSGHGM PMAWQSQQLS RSCAAPMQPV 120 IDSSSAWASV SHSTVLDGRD SAVSAARGGD LLPPTMPGFQ LPPPAAGFEH FPVDSGLVER 180 AMRSSSCFGG GNGTVSGTDQ AKASNVSADS ANEAKRRKGA KGEETGPAAA ATATGRSKGK 240 GAKEANEEQK EGYTHVRARK GQAINSHNLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV 300 MLDEIINYVQ SLQRQVKFLS MKLATVNLRL DLNLESLLSK DVLRFPGDPS SQRSTGFSFS 360 PEMMPKLQLS QSGMLQGGVQ GMANPDVFRT VMQTQLHERD AFREPASQMP HTFDGSFHSA 420 AQMVYPSVIG SQDLSIRPDQ YGFHM*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAATNNLRPY SHTHNASTMI DMEVSSHASS QSFDRPVSLP SLIPFGSPAV FSRMPLREGK  60
PKGRKGKREK EQHNRKSKIM DSDNGNGVGI QGNASSGHGM PMAWQSQQLS RSCAAPMQPV  120
IDSSSAWASV SHSTVLDGRD SAVSAARGGD LLPPTMPGFQ LPPPAAGFEH FPVDSGLVER  180
AMRSSSCFGG GNGTVSGTDQ AKASNVSADS ANEAKRRKGA KGEETGPAAA ATATGRSKGK  240
GAKEANEEQK EGYTHVRARK GQAINSHNLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVKFLS MKLATVNLRL DLNLESLLSK DVLRFPGDPS SQRSTGFSFS  360
PEMMPKLQLS QSGMLQGGVQ GMANPDVFRT VMQTQLHERD AFREPASQMP HTFDGSFHSA  420
AQMVYPSVIG SQDLSIRPDQ YGFHM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000104G0210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821587.1	1e-118	transcription factor bHLH49-like
TrEMBL	A0A0D9X952	1e-127	A0A0D9X952_9ORYZ; Uncharacterized protein
STRING	LPERR08G15600.1	1e-127	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	6e-41	bHLH family protein