PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000030G1780
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 430aa    MW: 45607 Da    PI: 5.8647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000030G1780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09258306355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01000030G1780 258 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 306
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.94E-11253310No hitNo description
SuperFamilySSF474596.28E-17253323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16256322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7258306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDMNESSEKG MESNASSGPG NGIPVEWQSQ FSSAFSCPPA QQPPMMNSFA VASGLWASAA  60
SQNMELSDVN VMSAARAAGF LAPVPGFLQQ GLGHFPVDSG FIERAARSSC FIGGGMMGAG  120
AFGAADQPMS NAFSGASEAL LDHQRKDGNE KAEPELAGND HEEVPSSEAA GGDCSSKGSD  180
AKKRRRPSEV MGTDQVQSSN LPADSANESV HSKDKGEESS PAAAMTTGKS KGKGAKESSE  240
SHKEEYIHVR ARRGQATNSH SLAERLRREK ISERMKLLQD LVPGCSKVTG KAVMLDEIIN  300
YVQSLQRQVE FLSMKLATVN PRLDLNIEGL LSKDLLRFPG VPSSSIGFSP EMMHPQLQLS  360
QPGLIQGGAA GMANPDVFRR IIQAQLSAKD GSQMPHRLNG SFSDVTQMAY PSLGAQDLSI  420
RPSQDGFQM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000030G1780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612420.10.0transcription factor bHLH49 isoform X2
TrEMBLQ69JJ60.0Q69JJ6_ORYSJ; BHLH-transcription factor
STRINGOS09T0474100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-64bHLH family protein