PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000023G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 567aa    MW: 59022.8 Da    PI: 6.0815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000023G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024103119319
                      ETTTTEEESSHHHHHHH CS
          zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                      C++Cgk Fs+++++  H
  PH01000023G0350 103 CKNCGKEFSSWELFLEH 119
                      **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.47E-52246No hitNo description
SMARTSM003550.962345IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5362345IPR007087Zinc finger, C2H2
PfamPF139120.00462445IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-42445IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473101128IPR007087Zinc finger, C2H2
SMARTSM00355310101121IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.36E-8263286No hitNo description
PROSITE profilePS5015710.221264291IPR007087Zinc finger, C2H2
PfamPF139124.5E-9264288IPR007087Zinc finger, C2H2
SMARTSM003550.13264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SuperFamilySSF576678.36E-8381408No hitNo description
PfamPF139124.8E-11386409IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182386408IPR007087Zinc finger, C2H2
SMARTSM003553.7386408IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MPPSPSPPRA PPRPPPQPSA YKHFCRVCNK GFTCGSALGG HMRAHGVGDD RLGADEDDDS  60
LGDEPVPCAR GGADGPWGTA GTAKHVYALR ANPNRLIRSC QACKNCGKEF SSWELFLEHG  120
KCNSGEEEDD ADGSLYSSSP PSEADGEEDP ALAAGWSKGK SLRRAKLMTA GIDSLPATAP  180
SRCPADEEED VANFLVMLSS SKVEQASVAE TDQESCASAS KEDGRRPQLL QPISFIAPAP  240
DPAMALPLAL PAPQYVSPVP RGMFECKACK KVFTSHQALG GHRASHKKVK GCFAAKIESN  300
ISESEPPRHA ATADPNDDKG KAATVEVHAN STVDGKTIVD ASTDSETNAG TSKAAAALTM  360
AITPIDHEPP VAALTVAPYK KKAKMHECSV CHRLFTSGQA LGGHKRCHWL TSSTADHANL  420
PPLAAEDLVG AACHQLTLRP MVDAPEPALD LTIAANPSPP VTSAARLAEA GSSSLHLDAP  480
LPVYFQPSAV PINASHRNKT TATSSHNVND AAGAGAAADD EADSTTVKRA KLSDLKDVSM  540
AGETTPWLQV GIGSSSAGGD EKSTRE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000023G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194231.10.0uncharacterized protein LOC109780050
TrEMBLF2EJC70.0F2EJC7_HORVV; Predicted protein
STRINGEMT295020.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-18C2H2-like zinc finger protein