PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000021G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 305aa    MW: 32224.3 Da    PI: 7.3113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000021G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005116138123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  PH01000021G0290 116 YECKTCNKCFPTFQALGGHRASH 138
                      99**********99999998887 PP
2zf-C2H211.90.00068204226123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  PH01000021G0290 204 HECSICGAEFASGQALGGHMRRH 226
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-11115140IPR007087Zinc finger, C2H2
SuperFamilySSF576677.24E-9115138No hitNo description
SMARTSM003550.094116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576677.24E-9199226No hitNo description
PfamPF139121.3E-12203227IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.699204231IPR007087Zinc finger, C2H2
SMARTSM003550.016204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MELSGEEDKQ QQHLAVVVKR ERTKRPRHHP PAKSASSSES TTTEEEDMAH CLILLAQGAA  60
VDSKPSPAPA PVQPQAQPSP PAAAPPPVVK SERYTSRKYT EAATTVDGVR AGFYVYECKT  120
CNKCFPTFQA LGGHRASHKK PRLAGSDEEN ANASTVTIAK SKPPMTTASQ PPSQVDASIV  180
PAPDVTTVLS LNNGAGSINK LRVHECSICG AEFASGQALG GHMRRHRPLH PPERAVTAIT  240
TDTKKEGSTS INLELDLNLP APSDEESVSL PPPPPPVVLG LGQFDDGKKG LMLTASAALV  300
DCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000021G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039897e-78AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040267e-78AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149587e-78AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-78CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-122zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-121A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGTraes_6DL_88DFCF552.11e-114(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-44C2H2 family protein