PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400069271
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 275aa    MW: 32156.1 Da    PI: 4.6791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400069271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.73.9e-2241282128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           p+G+rFhPtd el+ +yLk+  +g+ +  +++ i+ +diy    Pw++   +++eek  yf ++ +k++ + kr +r+ ++g+Wk +  
  PGSC0003DMP400069271   4 PMGIRFHPTDTELI-NYLKRFFKGELCLNQQCpIQFADIYGDqPPWEIF-GANSEEKFRYFITPLKKQKIEYKRFSRICAKGTWKGQTG 90 
                           89************.9*********96666777*******87368***5.666777788**************************9888 PP

                   NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++ + +++  +vg k+ + f   +++ g++ +W+m ey++
  PGSC0003DMP400069271  91 EHLIRRNHAPVVGFKRNFKFE--TSECGQNKTWLMVEYHV 128
                           89999999999*********8..788999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-222152IPR003441NAC domain
PROSITE profilePS5100526.063152IPR003441NAC domain
PfamPF023651.8E-154128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSKPMGIRFH PTDTELINYL KRFFKGELCL NQQCPIQFAD IYGDQPPWEI FGANSEEKFR  60
YFITPLKKQK IEYKRFSRIC AKGTWKGQTG EHLIRRNHAP VVGFKRNFKF ETSECGQNKT  120
WLMVEYHVAD SFFKENNHIL KEDFVVCRIK KKMDKEKNVD HVMEAQDGDV AGIIDPMLLE  180
PNHNNDYSTM EDQVRVCDEQ DAVEATTSEY DVQNSTYEAT TIENRETTLE VQEGHGVDDI  240
RSNEFQEEMY RTFEDIPVDI PEDWLQNSVV LQDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400069271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348012.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLM1E0Z40.0M1E0Z4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000975960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.13e-15NAC domain containing protein 50
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]