PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400069271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 32156.1 Da PI: 4.6791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.7 | 3.9e-22 | 4 | 128 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+G+rFhPtd el+ +yLk+ +g+ + +++ i+ +diy Pw++ +++eek yf ++ +k++ + kr +r+ ++g+Wk + PGSC0003DMP400069271 4 PMGIRFHPTDTELI-NYLKRFFKGELCLNQQCpIQFADIYGDqPPWEIF-GANSEEKFRYFITPLKKQKIEYKRFSRICAKGTWKGQTG 90 89************.9*********96666777*******87368***5.666777788**************************9888 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +++ +vg k+ + f +++ g++ +W+m ey++ PGSC0003DMP400069271 91 EHLIRRNHAPVVGFKRNFKFE--TSECGQNKTWLMVEYHV 128 89999999999*********8..788999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-22 | 2 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.06 | 3 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSKPMGIRFH PTDTELINYL KRFFKGELCL NQQCPIQFAD IYGDQPPWEI FGANSEEKFR 60 YFITPLKKQK IEYKRFSRIC AKGTWKGQTG EHLIRRNHAP VVGFKRNFKF ETSECGQNKT 120 WLMVEYHVAD SFFKENNHIL KEDFVVCRIK KKMDKEKNVD HVMEAQDGDV AGIIDPMLLE 180 PNHNNDYSTM EDQVRVCDEQ DAVEATTSEY DVQNSTYEAT TIENRETTLE VQEGHGVDDI 240 RSNEFQEEMY RTFEDIPVDI PEDWLQNSVV LQDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400069271 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348012.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | M1E0Z4 | 0.0 | M1E0Z4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097596 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 3e-15 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400069271 |
Publications ? help Back to Top | |||
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