PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400067946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 16882.2 Da PI: 7.256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.1 | 9.8e-18 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ rq +skR+ i KK +EL +LCd+++a+++fs+tg++ +yss PGSC0003DMP400067946 9 KKIEDPGARQQFYSKRKGSIVKKSNELGILCDTDIALLMFSPTGEVTTYSS 59 67999999*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.063 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.97E-21 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.19E-21 | 2 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-18 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGRNKIVMKK IEDPGARQQF YSKRKGSIVK KSNELGILCD TDIALLMFSP TGEVTTYSSG 60 KSFEDIMINA MKQPDELNRR SYEPQVEHIN TVEEADAYKQ YLLGAMERIQ RSKAKLLANQ 120 EFLQRNENVA MALVNAENVA AAGNESSCSN A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400067946 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-58 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078433.1 | 8e-69 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | M1DY31 | 1e-108 | M1DY31_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096271 | 1e-109 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 5e-18 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400067946 |
Publications ? help Back to Top | |||
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