PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066082 | ||||||||
Common Name | LOC102580558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23681.4 Da PI: 5.4387 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.7 | 4.1e-25 | 14 | 59 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 r++n++nrqvtfskRrng++KKA+EL++LC+a vav+ifss++k+y PGSC0003DMP400066082 14 RVQNSRNRQVTFSKRRNGLFKKASELCTLCGAYVAVVIFSSRNKIY 59 789*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-30 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.123 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.23E-31 | 7 | 74 | No hit | No description |
PRINTS | PR00404 | 1.7E-20 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-26 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-24 | 14 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-20 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-20 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRGLNCRRRI TIARVQNSRN RQVTFSKRRN GLFKKASELC TLCGAYVAVV IFSSRNKIYS 60 CGHPSVEFIV DKFLGENPQP DTNASNPDTD APNPNTDAPN PIVVTHQNAY VDEINKKLNK 120 LENSLEREKK YGEALQSLRN ELPYEKIDFL NLKKLSEALE AADEEVERVA SQLREGDIEF 180 PYQIIGSALA PLRVEENNSS DPDEGSSGSH E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-15 | 7 | 88 | 3 | 83 | MEF2 CHIMERA |
6byy_B | 5e-15 | 7 | 88 | 3 | 83 | MEF2 CHIMERA |
6byy_C | 5e-15 | 7 | 88 | 3 | 83 | MEF2 CHIMERA |
6byy_D | 5e-15 | 7 | 88 | 3 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066082 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-139 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340409.1 | 1e-155 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1DU30 | 1e-153 | M1DU30_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094407 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066082 |
Entrez Gene | 102580558 |
Publications ? help Back to Top | |||
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