PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065826
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 392aa    MW: 45931.2 Da    PI: 8.8843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065826genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-121696999
                          HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                            +k+g l +p  f+ ++  g++  +  +  + ++ g++W vk   ++ +   + ++ WkeFv++ +Lk gD++vFk++g+++f   v++f
  PGSC0003DMP400065826 16 PGFKNG-LKIPIGFL-KYlkGHD--Q-HEHAILTRGGKKWLVKA--NGWR---LEEGSWKEFVEELNLKLGDVLVFKHEGDMKF--DVSIF 94
                          566666.********.6655444..3.35777899*********..4444...67899********************999999..99999 PP

                          -S CS
                    B3 98 rk 99
                          ++
  PGSC0003DMP400065826 95 DS 96
                          86 PP
2B345.41.5e-14129213488
                           E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            +++ + l++g l++pk+fa ++   +g+k+ +  +++  ++ + W++ l  + +  +++ ++GW +F  +n LkegD ++F+++ + 
  PGSC0003DMP400065826 129 CTIRQYCLSKGFLWIPKHFAVANgfiKGNKKYG-LIIIDETQTKLWNLML--KSCNTKVYVADGWGKFSADNCLKEGDRIMFEVVTNG 213
                           56788999***************9985554443.677777899*******..888888*************************87643 PP
3B352.68e-17253333590
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           +++++ l+++ l+lp +f++++g+     ++++l +e+ rsW+v l   k++ ++ +++GW +F +ang+++gD+  F+l+++  +
  PGSC0003DMP400065826 253 TIRPYCLSKHFLYLPMDFVKSNGLMR--RREMILINEKRRSWSVWL--GKTGHHFAIKRGWTQFRNANGIQVGDTYNFELINNG-K 333
                           5678999***************9984..458***************..9**999*************************99853.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-17397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-18397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.605797IPR003340B3 DNA binding domain
CDDcd100177.93E-13895No hitNo description
SMARTSM010191.8E-141097IPR003340B3 DNA binding domain
PfamPF023622.1E-91896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13123217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-16125218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407126223IPR003340B3 DNA binding domain
SMARTSM010192.9E-9126222IPR003340B3 DNA binding domain
PfamPF023626.4E-12129215IPR003340B3 DNA binding domain
CDDcd100171.79E-9134208No hitNo description
SuperFamilySSF1019369.81E-20246340IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-18246339IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-15249343IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112249342IPR003340B3 DNA binding domain
PfamPF023623.0E-15253338IPR003340B3 DNA binding domain
CDDcd100174.33E-13257341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFKN GLKIPIGFLK YLKGHDQHEH AILTRGGKKW LVKANGWRLE  60
EGSWKEFVEE LNLKLGDVLV FKHEGDMKFD VSIFDSSHHC DKEYAKYEDE DEDENVTHDK  120
HLNQSYFECT IRQYCLSKGF LWIPKHFAVA NGFIKGNKKY GLIIIDETQT KLWNLMLKSC  180
NTKVYVADGW GKFSADNCLK EGDRIMFEVV TNGETPIWRS RVTSNAETPI SKGFSNKEAA  240
KDMDLSDSHF ICTIRPYCLS KHFLYLPMDF VKSNGLMRRR EMILINEKRR SWSVWLGKTG  300
HHFAIKRGWT QFRNANGIQV GDTYNFELIN NGKIPIVHFH CEYFFYDLII LCMCYTTQCQ  360
NLRLCFVLKI CRQIFWELRM PSQFTRKLNV F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065826
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-143HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774766.11e-149B3 domain-containing protein REM5-like isoform X1
RefseqXP_027774767.11e-149B3 domain-containing protein REM5-like isoform X1
TrEMBLM1DTI70.0M1DTI7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000941510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.18e-39B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]