PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 171aa MW: 19116.8 Da PI: 4.8855 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.6e-19 | 37 | 127 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k ++ps+v+ +l++pk+f+ +h k + ++l de+g +++ k+ + k++ l++GW++F a++L e+D++vF+l+++ + PGSC0003DMP400062968 37 FLKCMLPSHVTGGFCLSFPKRFCVSHLPK--HDANIVLVDEDGDEFSTKYLIGKSG----LSGGWRGFSIAHNLVENDVLVFQLIETCK 119 89************************433..4568***************666665....9************************9999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v+++r+ PGSC0003DMP400062968 120 F--KVHILRE 127 9..8998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-22 | 31 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 32 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-28 | 35 | 126 | No hit | No description |
SMART | SM01019 | 1.5E-19 | 37 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-17 | 37 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 37 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MCIGRKGQTD NSVDISSSAQ VRAEIFETTL PAEFPHFLKC MLPSHVTGGF CLSFPKRFCV 60 SHLPKHDANI VLVDEDGDEF STKYLIGKSG LSGGWRGFSI AHNLVENDVL VFQLIETCKF 120 KVHILRENCL SPIDVAVVLM DFIVEAHNED QNEKMNMCEA NEDKYLEPHE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062968 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240808.1 | 3e-64 | B3 domain-containing protein Os01g0234100-like | ||||
Refseq | XP_019257390.1 | 2e-64 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 | ||||
Swissprot | Q0JP99 | 3e-39 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
Swissprot | Q69V36 | 2e-39 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | M1DMA0 | 1e-123 | M1DMA0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091293 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13184 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062968 |
Publications ? help Back to Top | |||
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