PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062129
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 133aa    MW: 14412.5 Da    PI: 9.0111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062129genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-1157132182
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k ++ps+v+   +l++pk+f+ +h  k   +  ++l de+g +++ k+ + k++    l++G ++F  a++L e+ ++vF
  PGSC0003DMP400062129  57 FLKCMLPSHVTGGFCLSFPKRFCVSHLPK--HDANVVLVDEDGDEFSTKYLIGKNG----LSGGGRGFSIAHNLVENGVLVF 132
                           89************************433..4568***************666666....9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1551132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-1251132IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1755132No hitNo description
PfamPF023621.5E-957132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MKSRARSPSK VENGDNKKVQ MCIGRKGQTN NSVDISSSAQ LRAEIFQTTL PSEFPHFLKC  60
MLPSHVTGGF CLSFPKRFCV SHLPKHDANV VLVDEDGDEF STKYLIGKNG LSGGGRGFSI  120
AHNLVENGVL VF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258003.17e-51PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1DKF37e-93M1DKF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000904541e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-33B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]