PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051145 | ||||||||
Common Name | LOC102578495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | CO-like | ||||||||
Protein Properties | Length: 358aa MW: 39093.3 Da PI: 5.2473 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18 | 6e-06 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ +++ fC+ ++ +lC C ++H PGSC0003DMP400051145 11 KLCDSCKTTPATVFCRADSAFLCLGCDCKIHAA 43 68*************************999954 PP | |||||||
2 | zf-B_box | 24.9 | 4.3e-08 | 53 | 95 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C +H+ H++ PGSC0003DMP400051145 53 VWVCEVCEQAPAIVTCKADAAALCVTCDHDIHSAnplarrHER 95 689*****************************65777777776 PP | |||||||
3 | CCT | 70.5 | 4.1e-24 | 294 | 337 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PGSC0003DMP400051145 294 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-9 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.954 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.02E-6 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.196 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.9E-6 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.72E-7 | 54 | 98 | No hit | No description |
SMART | SM00336 | 4.1E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.896 | 294 | 336 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-18 | 294 | 336 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGTENWSLTA KLCDSCKTTP ATVFCRADSA FLCLGCDCKI HAANKLASRH ARVWVCEVCE 60 QAPAIVTCKA DAAALCVTCD HDIHSANPLA RRHERFPVVP FYDSAVAKSD GGGDADADAA 120 DDEKYFDSTS ENPSQPEEEA EAASWILPTP KEGTDQYKSA DYLFNDMDSY LDIDLMSCEQ 180 KPHIIHHQHG HYSSDGVVPV QNNNNNNETS THLPGPVVDG FPTYEIDFAG SKPYMYNFTS 240 QSISQSVSSS SIDVGVVPDH SAMTDVSNTF VMNSSAGTGT GTDAVPNAVS GLDREARVMR 300 YREKRKNRKF EKTIRYASRK AYAETRPRIK GRFAKRTEIE IDSLIAADAS YGVVPSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051145 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ882684 | 0.0 | DQ882684.1 Solanum tuberosum CONSTANS-like protein (CO) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342453.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-102 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | M1CVB0 | 0.0 | M1CVB0_SOLTU; B-box zinc finger protein 4 | ||||
STRING | PGSC0003DMT400075520 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-97 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051145 |
Entrez Gene | 102578495 |
Publications ? help Back to Top | |||
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