PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045465
Common NameLOC102606025
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 377aa    MW: 41958.1 Da    PI: 6.4415
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045465genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.66.6e-32146237397
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                           +++lws++D+++lL+G+ ++ka +g++ps+d++ f+ef++++++++vsk+ql eK+rrLKkK+ ++vk+   g+ep+f k +d  +fe+
  PGSC0003DMP400045465 146 PRSLWSDDDQLALLKGIAEYKAVKGMEPSADMSVFHEFIRGKLQVEVSKRQLREKVRRLKKKYLTNVKD---GEEPVFMKGQDFLVFEH 231
                           6789***************************************************************99...***************** PP

                DUF573  92 skkiWg 97 
                           sk+iWg
  PGSC0003DMP400045465 232 SKRIWG 237
                           *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-25148237IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSVSSSE EQEQVEESRE EEEQQSGEEE GEEESGEETE EPKTAHPVVK  60
RPITQKLQFS SESGSENRSG SESEAESGHS LPSPSALDFT AKPSVPAKAA APSKPAAKRQ  120
QDTQTEKGRK KPKIAEEEEK KSAATPRSLW SDDDQLALLK GIAEYKAVKG MEPSADMSVF  180
HEFIRGKLQV EVSKRQLREK VRRLKKKYLT NVKDGEEPVF MKGQDFLVFE HSKRIWGAPG  240
TSNGVSTNGT AKITVEVKKS SEPKRSAKVS KPKDDEKHVV VKEVVKEDII KGDQQDFQSE  300
YPHLTASFES MAGMSTMYPN GTNFLKEKMS LIANNKAKVL EKKWKKLEDD EAALMVNRLD  360
LIAEHYRLVV DAMRGN*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360555.10.0PREDICTED: neurofilament medium polypeptide-like
SwissprotQ94IK20.0STK_SOLTU; STOREKEEPER protein
TrEMBLM1CH610.0M1CH61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-23DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]