PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044662
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 308aa    MW: 34354 Da    PI: 7.1665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044662genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11105148855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR+++++ +e+L+ l+P++      K +K++i+ +Av++I++Lq
  PGSC0003DMP400044662 105 TERERRKKMRTLLETLQALVPNL----LAKADKSTIVYEAVNHIQKLQ 148
                           6*********************6....49******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-1095149No hitNo description
SuperFamilySSF474593.14E-1395165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1295159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.42797147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8105148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-6105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.41E-6224284No hitNo description
Gene3DG3DSA:3.30.70.2604.4E-5226287No hitNo description
PROSITE profilePS516718.734228307IPR002912ACT domain
CDDcd048738.30E-6229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNGGGENNDG LPWETNDFWS YLNLNDIQVG SGETFEGDKL PDLTRSDTCQ PLTVVNEVVE  60
PTIDVGKKRI PPNRKRNGKG IAEPNFGADE AKGKKESEHE IHIWTERERR KKMRTLLETL  120
QALVPNLLAK ADKSTIVYEA VNHIQKLQNT FKKLESQKLE RLEEYSIRLM SSQKVGNSWE  180
KYVGDQGSTN NSTAITPTTH GASPLIPTSF MTWSSPNVIL NICGEDAHIS VCCPKKPGLF  240
TIICYVLEKH KIDIVSAQIS SDQFRSMFMI QAHAKGGREL AQFSGAFTVE DMYKGATNEI  300
KLLITPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-164HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163702.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLM1CF940.0M1CF94_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000662590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-44bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]