PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044384

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 307aa MW: 35011.8 Da PI: 6.4389

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044384	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.2e-18	79	132	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PGSC0003DMP400044384 79 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 132 456899***********************************************9 PP
2	HD-ZIP_I/II	132	2.2e-42	78	170	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k+en++L++++++L++ PGSC0003DMP400044384 78 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIKAENDALQTQNQKLHA 166 69**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e+++ PGSC0003DMP400044384 167 EIMS 170 9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-19	55	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.4E-19	70	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	74	134	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	77	138	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-15	79	132	IPR001356	Homeobox domain
CDD	cd00086	1.54E-15	79	135	No hit	No description
PRINTS	PR00031	1.3E-5	105	114	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	114	130	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-17	134	175	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAFFPTNFML QTPHHEDEHQ PSTSLNPILP SCSPQDFHGI ASFLGKRSMS FSGMDGNNAC 60 EENHGEDDLS DDGSQAGEKK RRLNMEQVKT LEKNFELGNK LEPERKMQLA RALGLQPRQI 120 AIWFQNRRAR WKTKQLEKDY EVLKRQFDAI KAENDALQTQ NQKLHAEIMS LKNREQPTES 180 INLNKETEGS CSNRSENSSE IKLDISRTPA IDSPLSNHHP NISSRPFFPP SMIRSNNNNN 240 NNGVVVPHQL FHINSSSSRQ DLKLMDQNTT TTNNNSSVKE ESLSNMFCGI DDQTSFWPWL 300 EQQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044384

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF011556	0.0	AF011556.1 Lycopersicon esculentum jasmonic acid 1 (LEJA1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363243.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	1e-121	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M1CEL3	0.0	M1CEL3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065805	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-122	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044384

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]