PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041251
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 490aa    MW: 54218.3 Da    PI: 4.9215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041251genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11391436655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  PGSC0003DMP400041251 391 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 436
                           689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14388446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-11389440No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13390448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7391436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDDRSHQQQQ MTSGLTRYRS APSSYFTSLL SSNNPADVSG GSENCGYARD DFDQLLNPRV  60
SNSGIKQVFD RFVANIGPQD SNPDGLIDDT QQIQQNPMSN MDVRSEVVAP MKQEHEAQQQ  120
QMNYQCQEQQ SQNSQFIAPV KQEITQQNSD YSLTSQMNYQ TQAQQNHNST DFTSGMDNFG  180
RCNRLNQTKM DGGFGTGSSN SNLTRYNSSP AGFFAQVNIE NEYGALRGIG NYGAGSGTNA  240
AGEASFSNPS RFSSQTALPS GQPTSSGLLA PISEFGAKSI EESRRGDESF GKGHKSDESY  300
MAGFPMPSWD DSQILTDDFL QVPDDDEAGS FSNVNPSDNQ SSEGRARPPT LLSHLSLPQT  360
SAELSAMEKL LQDSVPCKVR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN  420
TADMLDFAAD YIKELETQVK VYPKTNHNEQ QKGIPSVQIS HFNTYNDYIF LNCFQALSET  480
RSKCTCLHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365809.10.0PREDICTED: transcription factor bHLH128-like
RefseqXP_006365810.10.0PREDICTED: transcription factor bHLH128-like
TrEMBLM1C7B40.0M1C7B4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000612840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-50bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]