PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400037922 | ||||||||
Common Name | LOC102583094, StWRKY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 173aa MW: 19921.6 Da PI: 9.5938 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.4 | 1.5e-33 | 93 | 151 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d++vv++tYeg H h+ PGSC0003DMP400037922 93 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEEVVVTTYEGMHSHP 151 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-34 | 78 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-30 | 85 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.458 | 88 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-39 | 93 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-27 | 94 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MENYATIFPS ASSSSSHHDE YISLMNSKSS ISDDAKEELL FQGKNKAGFL GLMASMETPR 60 DIITKKDEVI KSCKKKIKKP RYAFQTRSQV DILDDGYRWR KYGQKAVKNN KFPRSYYRCT 120 HQGCNVKKQV QRLSKDEEVV VTTYEGMHSH PIDKSTDNFE HILSQMQIYT SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 83 | 150 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 83 | 150 | 7 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400037922 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB061245 | 0.0 | AB061245.1 Solanum tuberosum StWRKY mRNA for WRKY-type DNA binding protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275604.1 | 1e-128 | probable WRKY transcription factor 75-like | ||||
Swissprot | Q9FYA2 | 4e-59 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | Q8H9D7 | 1e-127 | Q8H9D7_SOLTU; WRKY-type DNA binding protein | ||||
STRING | PGSC0003DMT400056352 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 8e-61 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400037922 |
Entrez Gene | 102583094 |