PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036611

Common Name

LOC102600275

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 211aa MW: 23215.8 Da PI: 7.8623

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036611	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.6	1.7e-32	115	171	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+++ekkl k+rkpylheSRh hAl+R+Rg+gGrF PGSC0003DMP400036611 115 DEPVFVNAKQYHGILRRRQSRAKADSEKKL-LKARKPYLHESRHLHALKRARGCGGRF 171 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	113	174	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.134	114	174	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.2E-27	116	171	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-22	117	139	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-22	148	171	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTSSLHYHSD GSENEQSENQ SEAHSESSSP AAGMSVPGTV TPNMHYVMPN LLGNGNSMIQ 60 AQTAYPYPDP YYRSIFAPYD AQPYPPQPYP AQPMVHVQLM GIQQAGVPLP SDAIDEPVFV 120 NAKQYHGILR RRQSRAKADS EKKLLKARKP YLHESRHLHA LKRARGCGGR FLTAKETDNQ 180 QKQDESGDKS HVNINLESGK DKVASSENAS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-22	114	184	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036611

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353014.1	1e-156	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	6e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M1BWA7	1e-154	M1BWA7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054416	1e-155	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-58	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036611
Entrez Gene	102600275

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]