PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400035623 | ||||||||
Common Name | LOC102592979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Trihelix | ||||||||
Protein Properties | Length: 415aa MW: 46317.6 Da PI: 9.5118 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.2 | 2.6e-19 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + t + s++ +fd+ PGSC0003DMP400035623 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDN 120 8***********************************9977766667788999*******************99987888899******* PP trihelix 85 lea 87 ++a PGSC0003DMP400035623 121 MDA 123 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 31 | 124 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 33 | 93 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.1E-9 | 40 | 129 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MSSNVDSTVV VAEDAVPEEK PPPPARRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN 120 MDAMENGTTV AAIRSNNQQI AEKQQTVTAV SGDGYALKTM IDQNLLKLKI NQKNGIASPP 180 NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGPSKQEHP HDLEFSSGYR MKNGISMKAK 240 RTGRIIGDVN GFDQGGIKGG GNFVMNPSFD CDEGSEYNNG SNANDGFHIR NMGVSSSRRS 300 YNSGNVEQQP NLDSRFSPGL SKFGKKGGGG VGMKRGRDPV EEMVLSIKLL GEGFMKMEKM 360 KMEMAKEVEQ MRMEMEMKRN EMILESQKQI VEAFVKVLGE VHKNKNAKTV SPES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400035623 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362480.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | M1BU20 | 0.0 | M1BU20_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052836 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-31 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400035623 |
Entrez Gene | 102592979 |
Publications ? help Back to Top | |||
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