PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035623
Common NameLOC102592979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 415aa    MW: 46317.6 Da    PI: 9.5118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035623genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.22.6e-1932123187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                           +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ +     +    +++ qC++k+e+l++ry+++k+++ +  t +  s++ +fd+
  PGSC0003DMP400035623  32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDN 120
                           8***********************************9977766667788999*******************99987888899******* PP

              trihelix  85 lea 87 
                           ++a
  PGSC0003DMP400035623 121 MDA 123
                           985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1931124No hitNo description
PROSITE profilePS500906.8993393IPR017877Myb-like domain
SMARTSM005951.1E-940129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSSNVDSTVV VAEDAVPEEK PPPPARRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN  120
MDAMENGTTV AAIRSNNQQI AEKQQTVTAV SGDGYALKTM IDQNLLKLKI NQKNGIASPP  180
NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGPSKQEHP HDLEFSSGYR MKNGISMKAK  240
RTGRIIGDVN GFDQGGIKGG GNFVMNPSFD CDEGSEYNNG SNANDGFHIR NMGVSSSRRS  300
YNSGNVEQQP NLDSRFSPGL SKFGKKGGGG VGMKRGRDPV EEMVLSIKLL GEGFMKMEKM  360
KMEMAKEVEQ MRMEMEMKRN EMILESQKQI VEAFVKVLGE VHKNKNAKTV SPES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362480.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM1BU200.0M1BU20_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000528360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127741617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-31Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]