PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400029625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 125aa MW: 14574.5 Da PI: 9.7914 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.6 | 5e-08 | 102 | 120 | 1 | 19 |
---SS-EEEEEEE--TT-S CS WRKY 1 ldDgynWrKYGqKevkgse 19 ldDgy+WrKYG+K+vk+++ PGSC0003DMP400029625 102 LDDGYKWRKYGKKKVKSNK 120 59**************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-8 | 91 | 120 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-7 | 95 | 120 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.844 | 97 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-4 | 103 | 121 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MTQDFSYNNF QDFESSSFLD QLFVDYSPTN KNFNTCILEN DHSHMMTQDC SYNGSSSNSY 60 YATPPNMNHL KEKPKVGIIK KKIKINETHV IALRTKTQLD VLDDGYKWRK YGKKKVKSNK 120 KYLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400029625 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-89 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252561.2 | 1e-70 | probable WRKY transcription factor 51 | ||||
TrEMBL | M1BF11 | 2e-87 | M1BF11_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043662 | 4e-88 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14192 | 10 | 13 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400029625 |
Publications ? help Back to Top | |||
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