PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027162 | ||||||||
Common Name | LOC102583951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 737aa MW: 75366.8 Da PI: 7.7995 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PGSC0003DMP400027162 56 FVCEICNKGFQRDQNLQLHRRGH 78 89******************988 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + PGSC0003DMP400027162 132 WKCDKCSKKYAVQSDLKAHLKIC 154 58******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.01E-8 | 55 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0032 | 56 | 78 | No hit | No description |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 120 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.01E-8 | 127 | 152 | No hit | No description |
SMART | SM00355 | 38 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 132 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MNDCAGSGEV SVLSSGEQAA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRASN EVRKRVYVCP ELTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDTEKA QNAVTTPIAD EDHKVQVVVS STPQTPPTPP PSLEPPAVPS PAALEPLPPP 240 VSPSTAVVSS DSPIQNPESP HTNSNGTITK QDIEETTAKS SLSGICSSSS CTGCTNSNCF 300 TSLTGICSSS WSSSSNGSTS SSSIFPSLTG ICGSTRSSSS NGSTGSISVF PSLSGICSNS 360 RSSSSNGSTH SSSIFSSSTG ICSSSIFPSS TGICSGSSIF SSSTGICSSS IFPSSTGICS 420 GSSIFSSSTG ICSSSIFPSS TGICSGSSIF SSSTGICSSS IFPSSTGICS GSSIFASSTG 480 IYSNSSSSSC NRSTSGSSIF TSLTGICSSS SNSSSNRSAS NSTFASLFAS STASGSLPSQ 540 APQFTDWFQS VAPAPPPDIE PPSSMEPISL CLAMNHSSSV FGPAGQERIQ YAAAPQPSMS 600 ATALLQKAAQ MGATATNSSL LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP 660 CDDGSGLKEL MLGTPSVFGP KHPTLDLLGL GMAAGGGSTP GLSALITSMG GNLDVAAAAG 720 PFDSGEFCGK EFGRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-29 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 2e-29 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027162 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174607 | 0.0 | AC174607.1 Solanum lycopersicum, complete sequence. | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346936.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-111 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | M1B988 | 0.0 | M1B988_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040064 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-95 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027162 |
Entrez Gene | 102583951 |
Publications ? help Back to Top | |||
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