PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026478
Common NameLOC102585500
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 347aa    MW: 39104.3 Da    PI: 10.1014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026478genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31280337359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  PGSC0003DMP400026478 280 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 337
                           9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-18231276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33266338IPR003657WRKY domain
PROSITE profilePS5081129.884273339IPR003657WRKY domain
SuperFamilySSF1182904.18E-27276338IPR003657WRKY domain
SMARTSM007749.4E-39278338IPR003657WRKY domain
PfamPF031062.4E-27280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVIT MLSQPHDEKQ FGNLVRETGE AVHKFKKVVT LLNSNLGHAR  60
VRKAKKILTP YPHSLLLENP SCKIDDPPKP LQLLPITYPE NIRLENGSNV NRIHPSLELN  120
SHGKNPLQLA QQTPLSSYHF TQQQQQLQQQ QQRRYQLQQQ QMKQQADMMY RRSNSGISLN  180
FDSSACTPTM SSTRSFISSL SIDGSVANLD GNAFHFIGAS RSADQSSFQH KKRCSGRGDE  240
GSVKCGSSGR CHCSKKRKHR VKRSIKVPAI SNKLADIPPD EYSWRKYGQK PIKGSPHPRG  300
YYKCSSMRGC PARKHVERCL EEPSMLIVTY EGEHNHPRLP SQSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20271340775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026478
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-152HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351633.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-121WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM1B7N30.0M1B7N3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000389860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-113WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]