PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024099
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 761aa    MW: 85781.8 Da    PI: 5.9593
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024099genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK39.89e-13570629551
                RWP-RK   5 isledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRkiks 51 
                           i+ + l+++F  +++dAAk+L              v++ +LKriC +y I RWP  k ++
  PGSC0003DMP400024099 570 ITRKILEQHFGRTLQDAAKNLHgslksllctsfiaVSQATLKRICKEYKITRWPNYKTRK 629
                           89999*************************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020425.9E-14570629IPR003035RWP-RK domain
SuperFamilySSF542771.11E-13674744No hitNo description
SMARTSM006661.7E-8679751IPR000270PB1 domain
PROSITE profilePS5174520.635679753IPR000270PB1 domain
PfamPF005641.1E-12680748IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-13681744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MEMEHSPSDV CSQMPCQLES NAWAFSSRKY KDELGYQRTI MCESVVNIKL IFQFLLSTSK  60
SFESYLLHTA SASVVSMFPT VKWRIQSVME KMSTPNICLV QFWAPIKVNG STFLSTADQT  120
FGFYKGIDKR LSSYRKLCLD TLIPIDDYTE IRFGPIERVY TRCLPEYNPD VSSYSAAEFP  180
LLELAIRLGI HSYYAVPVFN NYDQQYRGVL EIVSTQPSLH LSHLITPPVD DRLDEIKNEL  240
YEILERDSLP FAQIWIPYSP SVSLKVLYRA AASIYERSSS MYHEFEHVSE VCFIESGAAL  300
VGRAFASQGS CFCKDVTLLS ISEYPLVLSA RKVRFTQSFA ICLQSKCADN SVYVVEYFLP  360
PNKMSARDTR TFINMLLSTT KERLPGFVVA PGKELGQRML VEVVKVSPSD EFDSFEIGQS  420
LPSVESLQDG GGTTEFGQRL LSVQSLQDVG ETTEIDSFCQ QSNNVVAAAA LLVPSCSADK  480
RDSLNCERTV EVDLLLPHPI EEAVTNSGKV NLDVAHDDHI EDTLEIMQLD SHFEQPNIEI  540
NSAGNAMTNN NKIHSHKKST IQRIEKDYGI TRKILEQHFG RTLQDAAKNL HGSLKSLLCT  600
SFIAVSQATL KRICKEYKIT RWPNYKTRKA NVHVSQGVSF QVAEPYVVNQ QCPALSQEKG  660
IDYLGHKISP AIGKPCDGVM TVKVTYKGDI IKFQLSLSST RVELEGEVEK RLKISLERFS  720
IKYQDEGDDW ILISTDSDLR DRMHSLRLLG KDYYEITGYP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354239.10.0PREDICTED: protein NLP7-like
RefseqXP_006354240.10.0PREDICTED: protein NLP7-like
TrEMBLM1B2950.0M1B295_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.19e-38NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]