PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022619
Common NameLOC102601540
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 421aa    MW: 46608.2 Da    PI: 9.334
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022619genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC67.41.9e-21121164145
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           d+epgrCrRtDGKkWRC+r+v++g+k+C  H+hrg  rsrk++e+
  PGSC0003DMP400022619 121 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHVHRG-RRSRKPVEA 164
                           79*********************************.688998886 PP
2WRC58.89.2e-19311349240
                   WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                           a++ rCrR+DGKkWRCs++v++ +k+CE H+hrg +r+r
  PGSC0003DMP400022619 311 ADQQRCRRSDGKKWRCSKTVVPCQKYCETHMHRGANRKR 349
                           7899********************************997 PP
3QLQ48.92e-175793137
                   QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          s FTaaQ+q+L  Q+ ++KyL++++PvP +L ++i++
  PGSC0003DMP400022619 57 SLFTAAQFQELQLQAVIFKYLVSGLPVPFHLFFIIWN 93
                          68*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-85793IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.1085893IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-125992IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.67121165IPR014977WRC domain
PfamPF088798.2E-18122161IPR014977WRC domain
PROSITE profilePS5166720.629310354IPR014977WRC domain
PfamPF088795.8E-16312349IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MQLHLFSATP LSLSGKGKED EIKKKEGSPP CIELSLGYGS SSHVVEEDEK DAKSSNSLFT  60
AAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG DGGIYKLYPT LGRFDYTSMT  120
DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI  180
TKLYASSDDP GSKCAPASSK TSCLSSTSRS NQYNSIEDSS VKPRFINSGN GSEKQDNYMI  240
CNRKDITTSV RTPSFISGDN ADSKNIDFNR ISPSKTNQKQ NCGEARKHGA LVPIFGLSTK  300
SDLQHSIGSE ADQQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS  360
KPPSYRFCPP ENDGTRRNLN TSLSIYTIPG RQNITDDESN SNSISDATTI TDEIPAFVSH  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2179150.0AC217915.1 Solanum lycopersicum chromosome 1 clone C01SLm0026F20, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339771.10.0PREDICTED: growth-regulating factor 9
TrEMBLM1AYU10.0M1AYU1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000332460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.13e-28growth-regulating factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]