PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018893 | ||||||||
Common Name | LOC102586505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 376aa MW: 40849.4 Da PI: 4.6703 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.6 | 2.6e-16 | 215 | 251 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp +Rrgp g++tLCnaCGl+++ kg+ PGSC0003DMP400018893 215 CHHCGTNEseTPAMRRGPLGPRTLCNACGLMWANKGM 251 ********9************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.1E-7 | 80 | 115 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.459 | 80 | 115 | IPR010399 | Tify domain |
Pfam | PF06200 | 8.2E-10 | 83 | 114 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.689 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.5E-15 | 146 | 187 | IPR010402 | CCT domain |
SMART | SM00401 | 7.5E-9 | 209 | 262 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-12 | 213 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 213 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.19E-15 | 214 | 258 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 215 | 242 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.7E-14 | 215 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MEAADNSRNM LGGQYGVVAF QQEYMNVPIR VDRYGGGGFE ADDISVGGGY EEAMSSGEEL 60 QVCSMPLVAG PVDSGRVMAV PSRTSELNIS FEGQVYVFPA VTPEKVQAVM LLLGGCEVPS 120 YVPNTDSVAL QNTKSVDNTR QNISPRMASL IRFREKKKDR CFEKTIRYAC RKEVAQRMHR 180 KNGQFASLKE GEKSSADNID SGDSAAHSEP TLRRCHHCGT NESETPAMRR GPLGPRTLCN 240 ACGLMWANKG MLRDITKGGS HVPFDKNEPG TPDIKLSTFA PENSYLKQHQ EGSSGETKLT 300 EENPSVTTAE LDMQEATENF ADSSPFCIGS SSVNIDEEDN LDALANASGT EFEIPANFDE 360 QIGIDSHMSV HWPAT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018893 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233128 | 1e-155 | AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence. | |||
GenBank | AC240866 | 1e-155 | AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-155 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166114.1 | 0.0 | PREDICTED: GATA transcription factor 28-like isoform X2 | ||||
TrEMBL | M1AQ44 | 0.0 | M1AQ44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027729 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5602 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-61 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018893 |
Entrez Gene | 102586505 |
Publications ? help Back to Top | |||
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