PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400017379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 33561.9 Da PI: 8.534 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 55 | 77 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H PGSC0003DMP400017379 55 ACPECGEVFPKIESLEHHQAVkH 77 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.995 | 54 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.41E-19 | 79 | 243 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.2E-8 | 79 | 310 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 4.41E-19 | 271 | 310 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
SSSSSRSLAR SNGGGSSTCT TSSRGMQFRK LSGCYECHMI VDPSRYPLPR STICACPECG 60 EVFPKIESLE HHQAVKHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPICKI ERILKVHNTK 120 RTIQRFEDCR DAVKIHAVAT GKKNPRCAAD GNELLRFYCT SLTCTLGARD SSSLCGSVPG 180 CGVCTTIRHG FQGNKTNGVR TTASSGRAHD CLGSGMARRR AMIVCRVIAG RVKQTAKDVR 240 ASPTTEEENC SGSGSGSGSG SGSGSGSSLS ATDSIVYDSV SGHAGIYSNL EELYVFNPRA 300 ILPCFVVIYE ALES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400017379 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ809740 | 0.0 | FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence. | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342234.1 | 0.0 | PREDICTED: uncharacterized protein LOC102602448 | ||||
TrEMBL | M1ALJ4 | 0.0 | M1ALJ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400025521 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-129 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400017379 |
Publications ? help Back to Top | |||
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