PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014430
Common NameLOC102591565
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 469aa    MW: 51824.7 Da    PI: 8.7231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014430genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0580102123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  PGSC0003DMP400014430  80 FVCEICNKGFQRDQNLQLHRRGH 102
                           89*******************88 PP
2zf-C2H212.60.00041156178123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k++  +s+ k H + +
  PGSC0003DMP400014430 156 WKCEKCSKRYAVQSDWKAHSKIC 178
                           58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-679102No hitNo description
PfamPF121717.4E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-6151176No hitNo description
SMARTSM00355130156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSVLYPQL QNIQTQPPPN KKKRNLPGNP  60
DPEAEVVALS PRSLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV  120
YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYRCDCGTL FSRRDSFITH RAFCDALTEE SSRTIIPPPN SSTSHHLNLH TLQNFQMKQE  240
QQQSNDLSSQ LFIQNPNSNS NSSNNIFGAP PPHMSATALL QKAAQIGVTS SSHAANNMSA  300
NTFFSPTTST TTAMAMSGSG AGRGGGGDIA SCEYHPFENN NNNNNNTDFV TAGSTSFHDF  360
GASVTPGFME QVHDMQNMMA TTAPSLPCTS FDEGFGRGAH LMRQGKENNE GLTRDFLGLR  420
AFPHHRDFLN TTTTPAALHY MGSSSSDALA SFDQHHHHQN QNQSPWQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35152213364Zinc finger protein JACKDAW
5b3h_F2e-35152213364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351575.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM1AER70.0M1AER7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-117indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]