PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400012700

Common Name

LOC102592793

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 330aa MW: 35847.4 Da PI: 7.0783

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012700	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PGSC0003DMP400012700 137 YECKTCNRTFPSFQALGGHRTSH 159 99*********999998888777 PP
2	zf-C2H2	13.6	0.0002	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PGSC0003DMP400012700 223 HECSICGAEFSSGQALGGHMRRH 245 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.1E-13	136	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.57E-9	136	159	No hit	No description
PROSITE profile	PS50157	10.408	137	164	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.059	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.57E-9	218	245	No hit	No description
Pfam	PF13912	8.6E-13	223	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	223	245	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	223	245	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	225	245	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEFSEESIDR TLVFKGKRSK RPRQFMAVAM IASTSSTAAA DCGAGGGGSG GDGGEDVYNY 60 SSSMQYSSST TSTTQISTTS STEEDEDMAN CLILLAQSGR CQKLQVESSE RKMVKISSRK 120 FTEMATTTTG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KIKTVAEEKK STADSVSPSI 180 DHQQQQEEKF NRITASVTST QTVNKGNSNS HSNLIINSKP KIHECSICGA EFSSGQALGG 240 HMRRHRPPTI TATNTKITVD ETSNNNTSDN SSHDDDQNSK KPKIFLSLDL NLPASPEDDH 300 HRDNNNNFEF SANQQSLVFS AAALVDCHY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347206.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	M1AAN5	0.0	M1AAN5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400018457	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-50	C2H2 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012700
Entrez Gene	102592793

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]