PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400009655 | ||||||||
Common Name | LOC102579962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26374.3 Da PI: 4.6195 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.5e-20 | 23 | 73 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq+++Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k PGSC0003DMP400009655 23 RFSDEQVKVLESMFKQKTTLEPSKKLELARDLGLQPRQVAIWFQNRRARWK 73 69************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.3e-39 | 22 | 111 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +r+s+eqvk+LE++F+++++Lep++K elar+Lglqprqva+WFqnrRAR+ktkqlE++y++Lk+++d+l+ + e+L+ke+e+L ++l+ PGSC0003DMP400009655 22 KRFSDEQVKVLESMFKQKTTLEPSKKLELARDLGLQPRQVAIWFQNRRARWKTKQLEHEYRRLKDEFDNLAIKFESLKKEKESLLKQLQ 110 8**************************************************************************************98 PP HD-ZIP_I/II 93 e 93 e PGSC0003DMP400009655 111 E 111 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.09E-19 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 17 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 23 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-17 | 23 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.60E-16 | 23 | 76 | No hit | No description |
PRINTS | PR00031 | 3.7E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.6E-13 | 75 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEVAEDSSPV ECSKKKSHED GKRFSDEQVK VLESMFKQKT TLEPSKKLEL ARDLGLQPRQ 60 VAIWFQNRRA RWKTKQLEHE YRRLKDEFDN LAIKFESLKK EKESLLKQLQ ELSDQMENNH 120 AGCSRSQDSI DSEIYTSSEN IEAEVDVKDN IPGCINTSLD HERIKGADSD IEGTLFEHLR 180 WKEEEEFWNM EELGDSFLGS PEHWYAVGPG YSFDLSCENS KWWEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 17 | KKKSH |
2 | 67 | 75 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400009655 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-157 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-157 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367352.1 | 1e-165 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | M1A3K2 | 1e-164 | M1A3K2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400013968 | 1e-165 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 3e-31 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400009655 |
Entrez Gene | 102579962 |
Publications ? help Back to Top | |||
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