PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009437
Common NameLOC102588457
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 356aa    MW: 39950.1 Da    PI: 10.0673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009437genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31288346259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  PGSC0003DMP400009437 288 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDASMLIVTYEGEHNHP 346
                           69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-17240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.3E-34276347IPR003657WRKY domain
PROSITE profilePS5081130.4282348IPR003657WRKY domain
SuperFamilySSF1182904.05E-27285347IPR003657WRKY domain
SMARTSM007743.7E-39287347IPR003657WRKY domain
PfamPF031062.6E-27289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEIEEVNKA AVENCHRVIS LLSSRTHDQI SYTNLVRETG EAVHKFKKVV TLLNSTLGHA  60
RVRKSNKFKT PLPHNILVEN PNCKIDDHAK ALRLLPIDSP ENRVLEMGAN VKCNLTLGSP  120
SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QEQQQQQQQQ QQRRFLLQQQ QQLKHPAEMM  180
YRRSNSGVSL NFDSSTCTPT MSSTRSFISS LSVDGSVANG NSFHLIGASH SADQSSFQHK  240
RKCSGRGDEG SGKCGSSGRC HCSKKRKHRV KRSIKIPAVS NKLADIPSDE YSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE DASMLIVTYE GEHNHPRLPS QLANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21275349275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009437
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366665.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_015160479.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_015160480.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-116WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM1A3400.0M1A340_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-115WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]