PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009226
Common NameLOC102587921
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 994aa    MW: 110284 Da    PI: 5.9589
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009226genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.2e-41145222178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+
  PGSC0003DMP400009226 145 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 222
                           6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32141207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086143220IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-38144225IPR004333Transcription factor, SBP-box
PfamPF031107.7E-30146219IPR004333Transcription factor, SBP-box
SuperFamilySSF484033.67E-7764877IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-5766878IPR020683Ankyrin repeat-containing domain
CDDcd002041.60E-6767877No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MEASVGERFY HMGGTDLRGL GKRSLEWDLT DWKWDGDLFI ATPLQQNPSN YQSRQFFPVE  60
TGNLASSNSS SSCSDEVNHG MEQQRRELEK RRRVIVVDED DSGPLSLKLG GQGEPAADAG  120
RELGNWDGAP GKRTKLAAPA ATRAVCQVDD CGTDLSKAKD YHRRHKVCEM HSKASRALVG  180
NVMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QSETVANNNS LNDGQASGYS  240
LMSLLKILSN MHSNGANHTE DQDLLSHLLR SLASQGPTNG DKSLSGLLQE SSNLLNNRSI  300
LRNPEIASLI SNGSQAPPRP KERQFTNSAA EMPQKRLEDA RTASSQSPGI LFPIQSNSQA  360
YTPGRESTTG RRKLIDFDLN DAYVDSDDCG DDIDRSPVPE CPSWLQQDSH QSSPPQTSGN  420
SDSASAQSPS SSSGDNQNRT DRIVFKLFGK GPSDFPFVVR AQILDWLSHS PTEIESYIRP  480
GCVVLTIYLR LPESAWEELS YDLSSSLSRL LDVPGGDSFW TKGWIYIRVQ NQIAFVCDGQ  540
VLLDMSLPCV SNDDGTLLSV RPIAVPVSDR VQFLVKGYNL TKPSTRLLCA LEGNYLDPEA  600
DNEVEEVDGG DKDDKLQSLN FTCSIPAVGG RGFIEVEDHG VSNSFFPFII AEEDVCSEIR  660
MLESDLELTS SDYVKGHTNN IEARNQAMDF IHELGWLLHR NNLRARLEHF GPNAVLHPLK  720
RFKWLVEFSV DHEWCAVVKK LLNILLDGTV GGDDSSLKYA LTEMGLLHKA VRRNSRPLVE  780
LLLTYTPTNV ADELCSEYQS LVGVGGEFLF RPDCVGPGGL TPLHVAAGID GYEDVLDALT  840
DDPGKVAIEA WKNTRDSTGF TPEDYARLRG HYSYIHLVQR KISKKANSGH IVVDIPRVPS  900
VVENSNQKDE VCATTSLEIS ITERKAFPRP CRLCDRKLAY GSRSRSLLYR PAMFSMVAMA  960
AVCVCVALLF RGSPEVLYIF RPFRWEMVDF GTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-311452191084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349151.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLM1A2N40.0M1A2N4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000133170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]