PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008532
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 379aa    MW: 43455.7 Da    PI: 6.6903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008532genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001128150123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k F+++  L  H  +H
  PGSC0003DMP400008532 128 FQCKGCKKFFNSHQALGGHRASH 150
                           89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.58E-7127150No hitNo description
PfamPF139121.2E-6128152IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64128155IPR007087Zinc finger, C2H2
SMARTSM003550.83128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576677.58E-7218245No hitNo description
PfamPF139123.7E-12222246IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307223245IPR007087Zinc finger, C2H2
SMARTSM003550.29223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRSHGAVGDN SCSNRNYGEE ISEQKDMMNN FRREKLEGQK HSYNLRTNSN RLMFENNRST  60
SDHDHIDVEK SEYYYYGHDV KEKQHCSREE EEDLANCLVM LSNKSYDLSA NNNKEARNKA  120
KEVEKGMFQC KGCKKFFNSH QALGGHRASH KKVKGCYAAK LDDNIKDDEN NNNNNNNDDD  180
NAVDYEDSMI SPSDLILHQE SNDFQSQSPT SSSSFSRKRS RVHQCSICHR VFSSGQALGG  240
HKRCHWLTSS LPETTFIPTF QEIQYHNQEQ VLYNKPLFIN SHQPLDLNFP AQLGNPIEVG  300
LKLYNNPFEH EGPRSQLQLW KDDTNQNQNH NYKDSLSRDE NRNAKEAKLS NLKDVNLDKC  360
SSWLQVGIGP TPDILATL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008532
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355515.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLM1A1050.0M1A105_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000122740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-23C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]