PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006694
Common NameLOC102603681
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 424aa    MW: 48021.1 Da    PI: 6.6159
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006694genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-093503871954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +e+  L++++gL+++qV++WF N R +
  PGSC0003DMP400006694 350 FEHflHPYPNDSEKLMLSSQTGLSKNQVSNWFINARVR 387
                           554459******************************88 PP
2BELL932.7e-30212283172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           er+el  k+ kL+ lleeV++rY+qy++ ++ v s Fe++a  g+ k Yt lAl+a+SrhF cL+dai++qi
  PGSC0003DMP400006694 212 ERHELYVKIMKLIVLLEEVERRYEQYYQHMEEVTSTFEVIAAFGAGKAYTVLALQAMSRHFCCLRDAIISQI 283
                           799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-25143281IPR006563POX domain
PfamPF075265.4E-36149279IPR006563POX domain
PROSITE profilePS5007111.629328391IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-26330405IPR009057Homeodomain-like
SMARTSM003894.2E-9331395IPR001356Homeobox domain
CDDcd000862.02E-10331392No hitNo description
SuperFamilySSF466894.28E-17336398IPR009057Homeodomain-like
PfamPF059207.7E-17348387IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVSKDSPPPS HSSILHQFIN SDSIMTSQIG SQHFDMYQSD TTTAYQPHGG LSRSIEFVNH  60
PDFTTDSHDV NHSRHLMDLL GASHDANTNQ QAQRLSLSLG SHSLVSSFTN PSYMNQEIDQ  120
RNNEYSFSAA AMNQSFSNVC GTESFVSAIG NSKYLKPTQS LLEELVCIGG KTIDSSNEKF  180
IRRLSRNSKK GSLSLRAMLK GEIPPSNELF NERHELYVKI MKLIVLLEEV ERRYEQYYQH  240
MEEVTSTFEV IAAFGAGKAY TVLALQAMSR HFCCLRDAII SQINVIRQKM LRDVPKISSG  300
LSHLSLFEKE TLQNRISLQQ LGIIQGNRQA WRPIRGLPET SVAILRSWLF EHFLHPYPND  360
SEKLMLSSQT GLSKNQVSNW FINARVRLWK PMIEEMYKEE FAESSVESDN LLNREGVTDS  420
AEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15337395563Homeobox protein Meis2
3k2a_B2e-15337395563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341978.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X2
SwissprotQ1PFD11e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLM0ZWL80.0M0ZWL8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-91BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]