PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400006480 | ||||||||
Common Name | LOC102606359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | DBB | ||||||||
Protein Properties | Length: 183aa MW: 20104.9 Da PI: 7.6779 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.1e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H PGSC0003DMP400006480 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 29.5 | 1.5e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ PGSC0003DMP400006480 52 EVPRCDICESSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHS 92 789***************************99966566675 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.35E-7 | 3 | 45 | No hit | No description |
PROSITE profile | PS50119 | 9.357 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-7 | 51 | 91 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.25E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NEVPRCDICE 60 SSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK VEFPGDKSGP TEELARKTLD 120 PGENKRDHSH SPKPMVKDNQ QNHRGSPILI SDGSADGNGK KDKMIDLNVK PNRFHGHASN 180 QD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400006480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-37 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340704.1 | 1e-134 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 2e-72 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | M0ZW20 | 1e-132 | M0ZW20_SOLTU; B-box zinc finger protein 23 | ||||
STRING | PGSC0003DMT400009328 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 7e-75 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400006480 |
Entrez Gene | 102606359 |
Publications ? help Back to Top | |||
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