PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006460
Common NameLOC102600089
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 351aa    MW: 37329.1 Da    PI: 6.8864
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006460genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.61.6e-681192783155
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelksk 81 
                            g++sCqdCGnqakkdC+h+RCRtCCksrg++C+thv+stWvpaakrrerqqql+++++++++++          +++++kr+re+   
  PGSC0003DMP400006460 119 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGLQCQTHVRSTWVPAAKRRERQQQLSTLQQQQEEEQqqqqqqtlqlHRDNPKRQRED--P 205
                           5789**************************************************99998887776566666665555555555554..6 PP

                DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                           ++s+l +t++  ++ ++ le+ ++P++v s+avf+cvr+ssvdd+++++aYqtav+igGhvfkGiLydqG+e++
  PGSC0003DMP400006460 206 SASSLVCTRIIPSS-TSGLEVGNFPAKVTSNAVFHCVRMSSVDDADDQFAYQTAVNIGGHVFKGILYDQGPENQ 278
                           67777888876664.55899999************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.0E-66121276IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.1E-27123165IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-26228275IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAGFFSLGGG AASTSQDQQE TTNNPPTVIA PESNWFLYRN DHQQDLPTTY RGFELWQNTN  60
SQPQIRHPIN PLQDLYPTAA VGLGIGPSHS GYPAVARPDH DPPSGGGGGS GLVMMRSGGG  120
GISCQDCGNQ AKKDCTHMRC RTCCKSRGLQ CQTHVRSTWV PAAKRRERQQ QLSTLQQQQE  180
EEQQQQQQQT LQLHRDNPKR QREDPSASSL VCTRIIPSST SGLEVGNFPA KVTSNAVFHC  240
VRMSSVDDAD DQFAYQTAVN IGGHVFKGIL YDQGPENQYM AAGESSSGGG SASHQHNLIG  300
AAGTATSAAT SGGGGAGAAP EASPYLDPSL YPAPLNTFIA GTQFFPPPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006460
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340684.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C91e-123EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLM0ZW010.0M0ZW01_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000093070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-73Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]