PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006375
Common NameLOC102593405
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 421aa    MW: 46627.8 Da    PI: 4.4048
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006375genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.51.3e-35116217197
                DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 
                           klfqrlw +eDei lLqG++++++++g      + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++h
  PGSC0003DMP400006375 116 KLFQRLWMDEDEIELLQGFLEYTTQRGGinsssHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPH 204
                           579***********************987764334459*************************************************** PP

                DUF573  85 dqkifelskkiWg 97 
                           dq +fe+s+kiW 
  PGSC0003DMP400006375 205 DQATFEISRKIWS 217
                           ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-33118217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MASLEDQAVV YNDDDLDDEE DDEESGPPQN EAVVDEDDDV DVEEEEEEED DSTSSPPVPV  60
SNHSGAGEVT IAVVGVPATD SLCIEPKRER INDFGVIPAT IVVEEKKPLV LDDSRKLFQR  120
LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR  180
LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPDDGGFD  240
DEDSHLNLNN ANFIDHSPNF NLNPNGIDVK TPKSKKRSRG GTINSEEKPG YIQQYYQPSG  300
GATNVILPAT PVSMAAPQAT AAAAASIPSL IEETVRSCLS PIFKELFNNL KGSRYSGFGM  360
SLGPTPLGFG NSSMSSDINM KTDEKWRKQQ ILELEVYSKR LELVQDQIKA QLEELRSMSI  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340745.10.0PREDICTED: mediator-associated protein 1-like
SwissprotF4K5T45e-76STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLM0ZVR80.0M0ZVR8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000092060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-74DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]