PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005000
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 329aa    MW: 37579.1 Da    PI: 4.5548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005000genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-1525110899
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +++  ++rl++p  fae+h ++  ++  + le ++g+ Wev++  ++++++++l+kGWk+F+    +  +  +vF+++ rs f   v +
  PGSC0003DMP400005000  25 ASTDDLCRLRIPVVFAERHCKNMLNP--VFLEAPHGKAWEVEV--ENSQDQIWLAKGWKDFCGYYSISIRSLLVFTYNPRSHF--DVAI 107
                           566778*************5454444..***************..*******************************9987888..7777 PP

                           E-S CS
                    B3  97 frk 99 
                           +++
  PGSC0003DMP400005000 108 YDH 110
                           765 PP
2B344.62.7e-142423101587
                           -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            +++p +fa++ ++++ +   ++l +e+g +W v++  + +++++++++GW  F k+n++  g+++ Fkl++ 
  PGSC0003DMP400005000 242 YMTIPMRFAQSTDIINMK--NMRLVNEEGVEWGVEI--EYNRSMVIIKGGWTAFRKDNKIANGETCRFKLIRG 310
                           489******999988554..7***************..999999*************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-2012111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1913111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-1418109No hitNo description
PROSITE profilePS5086311.37818111IPR003340B3 DNA binding domain
SMARTSM010192.7E-620111IPR003340B3 DNA binding domain
PfamPF023629.4E-1226107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-16225317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16225316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829228322IPR003340B3 DNA binding domain
CDDcd100172.20E-10229310No hitNo description
SMARTSM010195.0E-8231324IPR003340B3 DNA binding domain
PfamPF023623.6E-12242310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVNKFHGSSF RNSSPNNPKF IQIIASTDDL CRLRIPVVFA ERHCKNMLNP VFLEAPHGKA  60
WEVEVENSQD QIWLAKGWKD FCGYYSISIR SLLVFTYNPR SHFDVAIYDH SKTEIEYPID  120
QEIESDEEEE DIPVLQANAN VIEEDIPVNL QTNANVIEEE EEDLPVNLQT NANVIEQEIS  180
EGYEEHDQRN NPTLVPVNQE DGEANSRSGE VGPKNSSRYS FVNLNGDNPY FEMVIKKAHA  240
TYMTIPMRFA QSTDIINMKN MRLVNEEGVE WGVEIEYNRS MVIIKGGWTA FRKDNKIANG  300
ETCRFKLIRG HIANVLQVQK IPTPLSLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-156HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM0ZSN10.0M0ZSN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000072000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-19B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]