PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004970
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 323aa    MW: 36612.8 Da    PI: 5.4564
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004970genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092622942355
                           SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  PGSC0003DMP400004970 262 PYPTEEEKNRLSEMTGLDQKQINNWFINQRKRH 294
                           8*****************************885 PP
2ELK38.82e-13214235122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK++L+rKYsgyL+sL++EF+
  PGSC0003DMP400004970 214 ELKEMLMRKYSGYLSSLRKEFL 235
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-1566110IPR005540KNOX1
PfamPF037904.6E-1868108IPR005540KNOX1
SMARTSM012562.3E-26116167IPR005541KNOX2
PfamPF037914.8E-25119166IPR005541KNOX2
PfamPF037892.1E-10214235IPR005539ELK domain
SMARTSM011883.1E-7214235IPR005539ELK domain
PROSITE profilePS5121311.383214234IPR005539ELK domain
PROSITE profilePS5007112.698234297IPR001356Homeobox domain
SuperFamilySSF466891.54E-19236306IPR009057Homeodomain-like
SMARTSM003891.3E-12236301IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-26239299IPR009057Homeodomain-like
CDDcd000865.71E-12246298No hitNo description
PfamPF059208.3E-17254293IPR008422Homeobox KN domain
PROSITE patternPS000270272295IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDELSKLHSA IVCSRSRQQQ QQAEAEDEAG PTIINNTHTS FPIHHYRQLE AADHQNNTKS  60
STNMSDLIKA QIANHPLYPN LLSAYLQCRK VGAPQGMTSI LEEISNENNL ISSSCHSSEI  120
GADPELDKFM ESYCAVLVKY KEELSKPFDE ATSFLNNIKS QLSSLCKDNL ITSTSFNSNN  180
NYISDEAGGT SEEDLGCEEM EAADSPANRE GDNELKEMLM RKYSGYLSSL RKEFLKKRKK  240
GKLPKEARIV LLDWWNTHYR WPYPTEEEKN RLSEMTGLDQ KQINNWFINQ RKRHWRPSED  300
MKFALMEGVS AGSMYFDGSG GT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229238LRKEFLKKRK
2235239KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776910.0KJ477691.1 Solanum tuberosum class I knox protein (KN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275325.10.0homeobox protein knotted-1-like 1-like
SwissprotQ9FP291e-98KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLM0ZSK20.0M0ZSK2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000071590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-71KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]