PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004381
Common NameLOC102604816
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 607aa    MW: 67347.7 Da    PI: 6.0763
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004381genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08489537348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  PGSC0003DMP400004381 489 PWTINEVVKLVEGVARYGAGRWSEIKRLAFsscPYRTSVDLKDKWRNLL 537
                           8****************************999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.119482541IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-13483540IPR009057Homeodomain-like
SMARTSM007174.0E-7486539IPR001005SANT/Myb domain
CDDcd116603.42E-18488538No hitNo description
SuperFamilySSF466893.44E-16488544IPR009057Homeodomain-like
PfamPF002492.7E-6489537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEASEPKIED CAVPVTSTIR ALEKEIAHPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCESKLVPD TRQISKSCIT EGYLLERNSF QVTEEKSNVL VDPVPDLGKI DAPEKVAVHG  120
LAPLSELSNV DQSVRTDVCS YSQDAPNEDT PSTSAAGSSW KPDFSKLEGK ICLDDLPVKE  180
LQETFKATFG RETSVKDKQW LKRRITMGLT NSCDFSCTTF IIRDNVVVKK GEEQICHRVK  240
SRISADSEDG VANSNSRGSL SDHDNRINDD ADLSGADVSS SAFESCNVTK DLNTEQITAK  300
RARKPTKRYI EELSEIESRE TSEKLASPDK ISRYQFACPE THLRPTKNVR SNARPLVTRQ  360
DSLGGSGVQI PFVSRIRRSR PRENFMPLLK LQPSGMDMAT RQVKSAFDIS GPQEDDKRNN  420
DLIKTSSSPG WTQQPLIAAC EKDEHYSGMK IVELENDIEV NDCSEDNSDD NVVTVPTQKG  480
GMRRKHHRPW TINEVVKLVE GVARYGAGRW SEIKRLAFSS CPYRTSVDLK DKWRNLLKAS  540
FVQLPAEKGI LNSRKQASVP IPAAILSRVR ELADMQGQIP PVLSACKSSG HSSSDRSVHE  600
ARSGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342945.10.0PREDICTED: uncharacterized protein LOC102604816 isoform X1
RefseqXP_006342946.10.0PREDICTED: uncharacterized protein LOC102604816 isoform X1
TrEMBLM0ZR630.0M0ZR63_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-111TRF-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]