PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400001547 | ||||||||
Common Name | LOC102584696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | RAV | ||||||||
Protein Properties | Length: 399aa MW: 44805.7 Da PI: 9.9471 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.3 | 1.9e-13 | 71 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PGSC0003DMP400001547 71 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 119 78****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 104.2 | 6.8e-33 | 207 | 304 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ PGSC0003DMP400001547 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRS 295 89****************************778889***************************************************87 PP SSSEE..EE CS B3 86 grsefelvv 94 + +++l++ PGSC0003DMP400001547 296 TSGDKQLYI 304 666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.59E-26 | 71 | 126 | No hit | No description |
Pfam | PF00847 | 4.5E-9 | 71 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 71 | 127 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.271 | 72 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-30 | 72 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-20 | 72 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-42 | 199 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-31 | 205 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-29 | 206 | 295 | No hit | No description |
Pfam | PF02362 | 6.1E-30 | 207 | 306 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-26 | 207 | 310 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.439 | 207 | 310 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSLTMIKPPP ESGLCRMGSG TSVIIDAENG 60 VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEENEAARAY DVAAQRFRGR 120 DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY LDELEQSKRL FGFTKDGMIK 180 RKDGQIISSF FGSTNDKVNC KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN 240 SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK 300 QLYIDFKAKN VGNTSVVVTN QVQVQIQVPQ VQMVRLFGVN ICKVPANVSN VVIDNNNNNN 360 NNNNNNMTSW SGGKRRMEME LLTFESCRKK QRVIINAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-56 | 204 | 310 | 11 | 118 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400001547 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362535.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 1e-140 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | M0ZJN6 | 0.0 | M0ZJN6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002125 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-141 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400001547 |
Entrez Gene | 102584696 |
Publications ? help Back to Top | |||
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