PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000821
Common NameLOC102605970
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 292aa    MW: 31559.9 Da    PI: 7.7871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000821genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064129151123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++F++   L  H  +H
  PGSC0003DMP400000821 129 YECKTCNRTFNSFQALGGHRASH 151
                           99**********99999998887 PP
2zf-C2H213.70.00018205227123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  Fs+   L  H+r+H
  PGSC0003DMP400000821 205 HECSICGSEFSSGQALGGHMRRH 227
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.9E-13128153IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8128151No hitNo description
PROSITE profilePS5015710.907129156IPR007087Zinc finger, C2H2
SMARTSM003550.065129151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8200227No hitNo description
SMARTSM003550.02205227IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-12205229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEVCQNFTDR SYALKGKRTK RSRPSSPLNT AGTTTTTITT TTGSSIAGGS NDGGGYGGDF  60
YNSPTTSTTQ ISTTSTSEED EDMANCLILL AQSGCGHKVE EVKKEKINSR KFAEMATSST  120
TGKAGFFVYE CKTCNRTFNS FQALGGHRAS HKKPKTILED KKSVTINTDS TAIAAGHDNL  180
HDQDKEHLNK ISSTTTHSNS KTKIHECSIC GSEFSSGQAL GGHMRRHRQP PTTTMITASN  240
LSESSSCHIH DEKSRRNVLS LDLNLPAPVE DDHKFEQSLV FSAAPLVDCY Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000821
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349125.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLM0ZHX60.0M0ZHX6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000011040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-48C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]